Running a business across both Amazon and eBay can be challenging, especially when it comes to managing your finances. I’ve been there—juggling fees, sales, returns, and tax obligations across two different platforms was exhausting until I found the right bookkeeping solution. After testing multiple platforms that could handle both Amazon and eBay sales, I discovered the best bookkeeping software that seamlessly integrates with both marketplaces. Here’s a detailed breakdown to help you manage your multichannel business like a pro.
Top 5 Bookkeeping Software for Amazon & eBay Sellers
| Software | Best For | Key Features | Pricing |
|---|---|---|---|
| FreshBooks | Best for ease & invoicing | Tracks expenses, manual data import, invoicing, multi-platform management | Starts at $17/month |
| QuickBooks Online | Best all-rounder for multichannel | Integrates with Amazon & eBay (via A2X or OneSaas), inventory management | Starts at $30/month |
| A2X Accounting | Best for Amazon & eBay integration | Direct integration for Amazon/eBay, auto-categorization of fees & sales | Starts at $19/month |
| Xero | Best for scalability & growth | Multi-channel integration (via A2X), multi-currency, inventory tracking | Starts at $13/month |
| Zoho Books | Best budget-friendly option | Affordable, automates transactions, integrates with eBay and Amazon | Starts at $12/month |
FreshBooks: Best for Simplicity and Invoicing
If you’re managing sales on both Amazon and eBay but need something simple for tracking expenses and invoicing, FreshBooks is a great solution. While it doesn’t offer native integrations with Amazon or eBay, it’s ideal for smaller sellers who want to manage their finances with ease.
- Why It Worked for Me: FreshBooks was perfect for invoicing clients outside of Amazon and eBay while keeping track of my expenses. You can manually import sales data from both platforms to get an overall picture of your cash flow.
- Multi-Platform Flexibility: FreshBooks allows you to categorize expenses and manually input Amazon and eBay sales. While not automated for multichannel sellers, it’s simple and effective for those with smaller operations or who prefer manual data entry.
- Invoicing Excellence: FreshBooks shines in invoicing. If you’re selling through other platforms or offering services alongside your product sales, its invoicing tools make it easy to get paid on time.
- Amazon & eBay Integration: FreshBooks doesn’t natively integrate with Amazon or eBay, but you can import CSV files from both platforms. For more automation, third-party apps like Zapier can help sync Amazon and eBay data with FreshBooks.
- Pricing: Starts at $17/month for the Lite plan, which includes invoicing, expense tracking, and basic financial reports.
QuickBooks Online: Best All-Rounder for Amazon & eBay Sellers
QuickBooks Online is the most versatile bookkeeping software for sellers who operate on both Amazon and eBay. With powerful integrations through A2X and OneSaas, QuickBooks can automatically track and categorize your sales, fees, and expenses across both platforms.
- Why I Loved It: QuickBooks was my go-to for handling the complex needs of selling on Amazon and eBay. It automatically imported my sales data, tracked inventory, and calculated sales tax. The reporting tools were excellent for giving me a clear picture of my business performance.
- Amazon & eBay Integration: With A2X for Amazon and OneSaas for eBay, QuickBooks Online automatically syncs all your sales data from both platforms. This meant I didn’t have to manually enter sales or fees—everything was categorized correctly, saving me hours of work.
- Sales Tax & Inventory Management: QuickBooks calculates and tracks sales tax automatically, ensuring compliance across multiple regions. Its inventory management tools helped me monitor stock levels and reorder products across both Amazon and eBay.
- Mobile App: QuickBooks has a robust mobile app that allows you to manage your finances on the go. I was able to check sales reports, track expenses, and even send invoices while on the move.
- Pricing: Starts at $30/month for the Simple Start plan, with higher tiers offering additional features like multi-currency support and advanced reporting.
A2X Accounting: Best for Seamless Amazon & eBay Integration
A2X Accounting is an essential tool for sellers who want full automation and accurate bookkeeping for both Amazon and eBay sales. While A2X isn’t a full bookkeeping platform on its own, it works alongside accounting software like QuickBooks or Xero to automatically sync all your sales data from both Amazon and eBay.
- Why I Loved It: A2X saved me countless hours by automating the import of Amazon and eBay sales, fees, and payouts directly into my accounting software. It broke down complex fee structures, shipping costs, and sales tax into clear, organized categories.
- Amazon & eBay Integration: A2X connects directly with both Amazon and eBay Seller Central. It automatically categorizes sales, refunds, and fees, and ensures your transactions are reconciled properly in QuickBooks or Xero.
- Tax-Ready Data: A2X generates summaries of your Amazon and eBay transactions that are tax-ready, making tax filing a breeze. It ensures all your fees, shipping, and commissions are correctly categorized for accurate financial reporting.
- Multi-Currency Support: If you sell internationally on both platforms, A2X can handle multi-currency transactions, converting everything into your home currency for easier reporting.
- Pricing: Starts at $19/month, with pricing based on the volume of transactions.
Xero: Best for Scalability and Growth
Xero is a cloud-based accounting platform that’s perfect for multichannel sellers looking for a scalable solution. With its sleek design and powerful features, Xero integrates seamlessly with A2X to automatically import your Amazon and eBay transactions, making it a great choice for growing businesses.
- Why It Stood Out: Xero’s clean interface and scalability made it an ideal solution as my business grew. With A2X integration, I could automate the syncing of Amazon and eBay data, keeping my books accurate and up-to-date without manual input.
- Amazon & eBay Integration via A2X: Xero works perfectly with A2X, which automatically imports and reconciles your sales, fees, and refunds from both Amazon and eBay. I didn’t have to worry about categorizing transactions—A2X did all the heavy lifting.
- Multi-Currency & Multi-Channel: If you sell in multiple marketplaces or currencies, Xero makes it easy to track everything. It converts foreign sales into your local currency and handles multi-channel inventory management across Amazon and eBay.
- Inventory Tracking: Xero’s inventory management tools helped me track stock levels, cost of goods sold (COGS), and set reorder points, ensuring I never ran out of stock on either platform.
- Pricing: Starts at $13/month for the Early plan, with higher tiers offering advanced features like bulk reconciliation and multi-currency support.
Zoho Books: Best Budget-Friendly Option
If you’re looking for an affordable option to manage your Amazon and eBay bookkeeping, Zoho Books is a great alternative. While it doesn’t offer native Amazon or eBay integrations, it’s cost-effective and integrates through third-party apps like Zapier to automate sales and expense tracking.
- Why I Used It: Zoho Books offered everything I needed to track sales and expenses without the higher cost of some other platforms. It’s ideal for small to mid-sized sellers who want to keep bookkeeping simple but effective.
- Amazon & eBay Integration: Although Zoho Books doesn’t natively integrate with Amazon or eBay, third-party tools like Zapier allow you to connect both platforms and import sales data. You can also import CSV files from Amazon and eBay manually.
- Expense Tracking & Tax Compliance: Zoho Books automates expense tracking and tax calculations, helping me stay compliant across different states and countries. Its automated workflows allowed me to stay organized without spending too much time managing my books.
- Mobile App: Zoho Books has a mobile app that lets you track expenses, send invoices, and view financial reports, making it a convenient option for sellers who need access on the go.
- Pricing: Starts at $12/month, making it the most budget-friendly option for sellers managing both Amazon and eBay transactions.
Key Considerations When Choosing the Best Bookkeeping Software for Amazon & eBay Sellers
1. Amazon & eBay Integration
- For seamless integration, A2X offers the best solution for syncing your Amazon and eBay transactions with bookkeeping software like QuickBooks Online or Xero. It automates the import of sales, fees, and taxes, reducing manual input and errors.
2. Inventory Management
- If you need to track inventory across both platforms, QuickBooks Online and Xero provide robust inventory management features that allow you to monitor stock levels, cost of goods sold, and set reorder points.
3. Sales Tax Compliance
- QuickBooks and Xero handle sales tax calculations automatically, ensuring compliance across different states or regions. This is particularly important for eBay sellers subject to changing sales tax regulations.
4. Scalability
- As your business grows, you’ll need bookkeeping software that can scale with you. Xero and QuickBooks are perfect for larger businesses that need more advanced features like multi-currency support, detailed reporting, and bulk reconciliation.
5. Budget
- If you’re on a tight budget or just starting out, Zoho Books offers affordable bookkeeping with all the essential features. It’s ideal for smaller sellers looking for a cost-effective solution.
Final Thoughts
For the best overall experience, QuickBooks Online paired with A2X is the top choice for managing your Amazon and eBay sales. It offers seamless integration, excellent inventory tracking, and automated tax compliance. Xero is another great option if you’re looking for a scalable, cloud-based solution. For budget-conscious sellers, Zoho Books provides solid bookkeeping features at a fraction of the cost, with integration options via third-party tools.
Whichever software you choose, getting your bookkeeping system set up correctly will save you time, keep your finances organized, and ensure your Amazon and eBay business runs smoothly.