Running a business on Amazon Seller Central is no small feat, especially when it comes to managing your finances. As I expanded my Amazon store, I quickly realized how overwhelming it can be to keep track of all the fees, sales, inventory, and taxes. After testing several bookkeeping solutions, I found a few that made life much easier and helped me stay on top of my Amazon Seller Central finances. Here’s my breakdown of the best bookkeeping software for Amazon sellers.
Top 5 Bookkeeping Software for Amazon Seller Central
| Software | Best For | Key Features | Pricing |
|---|---|---|---|
| FreshBooks | Best for ease & invoicing | Tracks expenses, manual import for Amazon data, invoicing | Starts at $17/month |
| QuickBooks Online | Best all-rounder for Amazon | Syncs with Amazon via A2X, inventory tracking, sales tax compliance | Starts at $30/month |
| A2X Accounting | Best Amazon integration | Direct integration with Amazon, detailed sales & fees tracking | Starts at $19/month |
| Xero | Scalable & cloud-based | Integrates with A2X, multi-currency support, tax-ready reports | Starts at $13/month |
| Zoho Books | Best budget option | Affordable, integrates with Amazon, automates transactions | Starts at $12/month |
FreshBooks: Best for Simplicity and Invoicing
If your Amazon business requires easy invoicing and basic expense tracking, FreshBooks is a great choice. While FreshBooks doesn’t offer direct Amazon integration, it’s still a solid option for smaller sellers who prefer to manually import Amazon data or integrate through third-party solutions.
- Why I Liked It: FreshBooks is incredibly intuitive and focuses heavily on invoicing, which is great if you run a multi-channel business that includes wholesale or service components. You can track your Amazon-related expenses by importing the data manually or using CSV files from Seller Central.
- Invoicing Powerhouse: FreshBooks allows you to send invoices quickly and offers automatic payment reminders, which is helpful if you deal with clients outside of Amazon.
- Mobile App: The FreshBooks mobile app made it easy for me to track expenses, monitor cash flow, and send invoices even while on the go.
- Amazon Integration: FreshBooks doesn’t have direct integration with Amazon Seller Central, but you can import CSV files from your Amazon transactions to keep track of sales. For seamless automation, pairing it with third-party apps like A2X or using Zapier is a good workaround.
- Pricing: Starts at $17/month for the Lite plan, which includes invoicing, expense tracking, and financial reports.
QuickBooks Online: The Best All-Rounder for Amazon Sellers
QuickBooks Online is the most versatile bookkeeping software for Amazon sellers. It offers all the core features you need—inventory management, expense tracking, tax compliance—and it integrates seamlessly with Amazon Seller Central through A2X, a tool that syncs Amazon transactions directly into QuickBooks.
- Why It Stood Out: QuickBooks Online allowed me to automate most of my Amazon bookkeeping tasks. With A2X integration, I was able to track every sale, fee, refund, and tax. The software automatically categorized Amazon fees and commissions, helping me maintain a clean set of books.
- Amazon Integration via A2X: A2X is the game-changer here. It pulls all of your Amazon transactions (sales, fees, refunds, etc.) from Seller Central and imports them into QuickBooks, making reconciliation and reporting effortless. A2X breaks down Amazon payouts and matches them to the transactions in your bank account, so you know exactly where every penny went.
- Sales Tax Tracking: QuickBooks Online tracks sales tax across different states and countries, ensuring you’re always compliant with tax regulations.
- Inventory Management: I also found QuickBooks useful for tracking inventory. It allows you to monitor stock levels, set reorder points, and keep track of your cost of goods sold (COGS)—essential for an Amazon FBA or FBM seller.
- Pricing: Starts at $30/month for the Simple Start plan, with higher-tier plans offering multi-user access and advanced reporting.
A2X Accounting: The Best Tool for Amazon Seller Central Integration
A2X Accounting is not standalone bookkeeping software but a crucial tool for Amazon sellers that integrates Amazon Seller Central with your accounting platform (QuickBooks or Xero). It automatically imports and organizes all Amazon sales, fees, refunds, and other transactions, making it the go-to tool for streamlining your Amazon bookkeeping.
- Why I Loved It: A2X was the best at automatically handling the messy details of Amazon bookkeeping, such as reconciling Amazon payouts with your bank deposits. It breaks down the fees, commissions, and shipping costs, then sends it all neatly into QuickBooks or Xero.
- Built for Amazon: A2X pulls in your Amazon transactions at the end of every settlement period. This includes sales, shipping fees, FBA fees, and refunds—automatically matching them with your bank deposits.
- Tax-Ready Data: A2X ensures that all the data imported into QuickBooks or Xero is tax-ready. It breaks down each transaction by tax category, which simplifies tax filing and ensures compliance with sales tax regulations.
- Multi-Currency Support: If you’re selling in multiple Amazon marketplaces, A2X also supports multi-currency transactions, converting everything into your home currency for easier financial reporting.
- Pricing: Starts at $19/month, with pricing based on your transaction volume.
Xero: Best Cloud-Based and Scalable Solution
Xero is an excellent option for Amazon sellers looking for a scalable, cloud-based bookkeeping solution. Like QuickBooks, Xero integrates with A2X, which automatically syncs your Amazon Seller Central transactions with Xero for easy reconciliation and reporting.
- What I Liked: Xero offers a sleek, cloud-based platform with advanced features like multi-currency support, inventory management, and detailed financial reporting. The A2X integration made managing my Amazon sales, fees, and refunds a breeze.
- Amazon Integration via A2X: Xero integrates with A2X to pull in all your Amazon Seller Central transactions. A2X organizes everything into neat, tax-ready reports, allowing me to reconcile Amazon payouts easily.
- Multi-Currency & Multi-Channel: Xero shines if you’re selling internationally. It handles multi-currency transactions and integrates with other sales channels beyond Amazon, making it ideal for multi-channel sellers.
- Inventory Management: Xero’s inventory tracking tools were particularly useful for managing my Amazon FBA stock levels. It helped me keep an eye on inventory, track COGS, and set reorder points to avoid stockouts.
- Pricing: Starts at $13/month for the Starter plan. Higher plans like Growing and Established offer more robust reporting, multi-currency support, and bulk transaction reconciliation.
Zoho Books: Best Budget-Friendly Option for Amazon Sellers
For Amazon sellers looking for an affordable option, Zoho Books provides a great balance of functionality and cost. While it’s not as feature-packed as QuickBooks or Xero, it integrates with Amazon Seller Central through third-party apps and offers solid bookkeeping features at a lower price.
- Why I Used It: Zoho Books gave me all the basics I needed for a fraction of the cost. It offered automated bookkeeping, tracked expenses, and provided key financial reports without breaking the bank.
- Amazon Integration: Zoho Books doesn’t offer direct integration with Amazon Seller Central, but third-party apps like Zapier can connect your Amazon data to Zoho. You can also import CSV files from Amazon to keep track of your sales.
- Tax Tracking & Compliance: Zoho Books automates tax calculations and keeps you compliant with local sales tax regulations, which was a huge relief during tax season.
- Inventory Management: Zoho’s inventory management tools let me track stock levels, and although they’re not as advanced as Xero or QuickBooks, they’re perfect for small to mid-sized sellers.
- Pricing: Starts at $12/month, making it a cost-effective solution for Amazon sellers on a budget.
Key Considerations When Choosing the Best Bookkeeping Software for Amazon Seller Central
1. Amazon Integration
- For the smoothest bookkeeping experience, look for software that integrates directly with Amazon Seller Central. A2X is the gold standard for this and works seamlessly with both QuickBooks Online and Xero.
2. Inventory Management
- If you manage physical products, having an integrated inventory tracking system is crucial. QuickBooks and Xero offer robust inventory management tools, which allow you to track stock levels, costs, and reorder points.
3. Sales Tax Compliance
- Sales tax tracking can be tricky, especially with Amazon’s ever-changing sales tax laws. QuickBooks and Xero offer automatic tax calculation tools, ensuring you stay compliant no matter where you’re selling.
4. Scalability
- As your Amazon business grows, so do your bookkeeping needs. If you’re looking for a scalable solution, Xero and QuickBooks Online are ideal as they can handle large volumes of transactions and offer more advanced financial reporting.
5. Budget
- If you’re on a tight budget or just starting out, Zoho Books offers affordable bookkeeping solutions without compromising on core features. However, if you need full automation with Amazon, investing in QuickBooks or Xero with A2X will save you time in the long run.
Final Thoughts
For the best overall experience with Amazon Seller Central, QuickBooks Online paired with A2X is the top choice. This combination provides seamless integration, robust inventory management, and tax tracking to help you manage the complexities of running an Amazon business. Xero is also a great option for sellers looking for a scalable, cloud-based solution with multi-currency support. If you’re on a tighter budget, Zoho Books is a fantastic affordable alternative.
Whichever software you choose, setting up the right bookkeeping system will save you hours of manual work, keep your finances in order, and ensure smooth sailing when tax season arrives!